[ Drops of Jupyter ]

Tidbits on statistics, programming, science, and their collision with the world.

 

 

Multiple testing correction for family-wise error-rate and false discovery rate

Re-implementing for knowledge and profit(?).
Dec 17, 2022
Thadryan

Stats Python in a Hurry Part 3: Simulation, Basic Analysis, & Modeling

Transferring the basics of my R modeling knowledge back to my first language.
Dec 13, 2022
Thadryan

mako colormap

Stats Python in a Hurry Part 2: Visualization

Transferring my R data viz knowledge back to my first language.
Dec 12, 2022
Thadryan

 

Stats Python in a Hurry Part 1: Data Wrangling

Transferring my R data-munging knowledge back to my first language.
Dec 11, 2022
Thadryan

 

Summarizing a review of contributors to the opioid epidemic

Opioids
Research
A concise summary of Cerdá, et al with some additional fundamentals.
Dec 10, 2022
Thadryan

 

A Survival Guide for Students Starting an MS in Bioinformatics

Academia
Advice
Some lessons learned in grad school.
Sep 29, 2021
Thadyan

 

Rygor: a Retraction Watch database companion

Tools
A command line tool to check a list of citations against The Retraction Watch Database
Jan 19, 2021
Thadryan

In Honor of MLK 2021: “I Have A Dream” Wordclouds Revisited

Sociopolitical
Some more wordclouds to celebrate the day.
Jan 18, 2021
Thadryan

 

An interactive Bayseian app for interpretation of SARS-CoV-2 antibody tests

Tools
Publications
Statistics
JavaScript
A webapp to complement our recent paper.
Jan 8, 2021
Thadryan

 

Fact Check: The Quote Heather Mac Donald presents when discussing Johnson et al comes from a passage of a pre-print that does not appear in the published work.

Sociopolitical
Analysis
More bad form.
Jul 11, 2020
Thadryan

 

Evidence Heather Mac Donald Presented A Pre-print Claim That Was Remove In Peer Review As Scientific

Sociopolitical
Analysis
More details on a previously observed biff from HMD.
Jul 10, 2020
Thadryan

 

Letter - “The Myth of Systemic Police Racism” is full of statistical and journalistic errors

Sociopolitical
Analysis
Applying some more skepticism to a recent WSJ Op-ed, because it deserves it.
Jul 9, 2020
Thadryan

 

Video - “The Myth of Systemic Police Racism” is full of statistical and journalistic errors

Sociopolitical
Analysis
Applying some skepticism to a recent WSJ Op-ed
Jun 27, 2020
Thadryan

 

A Case study in Silent Data Corruption in an RNA-Seq Experiment

R
Bioinformatics
Statistics
Differential Expression
Tools
How a subtle bug and misleading error message can transform your RNA-Seq data.
Apr 27, 2020
Thadryan

 

How to install Arch Linux on a VirtualBox VM

Linux
Testing Arch before you wreck your computer installing it.
Mar 30, 2020
Thadryan

In Honor of MLK 2020: ‘Letter from Birmingham Jail’ Wordcloud Example in R

Sociopolitical
Marking the occasion with word clouds.
Jan 20, 2020
Thadryan

 

Seasonality in gun deaths

Sociopolitical
Analysis
R
Statistics
Practicing data analysis on some CDC gun data.
Aug 30, 2019
Thadryan

 

Closures in Python

Python
Functional Programming
Makeshift type checking in Python and when I find it handy.
Mar 28, 2019
Thadryan

 

A more rigorous ASH

Antigens
Python
Builing on the ASH tool from a previous post.
Jan 31, 2019
Thadryan

 

Perl for the impatient

Perl
A dangerously fast introduction to a dangerously concise language.
Oct 4, 2018
Thadryan

 

Python imports: Sample Project + Explanations

Python
Answering a question on using imports in Python pograms
Sep 30, 2018
Thadryan

 

Object-oriented Python: an overview

Python
Object-Oriented Programming
An overview of object-oriented programming in Python.
Aug 30, 2018
Thadryan

 

A handshake with Scala

Scala is a JVM language that seeks to marry functional and object-oriented programming styles. It was was Designed by Martin Odersky and first appeared in 2004. While I…
Jul 20, 2018
Thadryan

 

Some light-hearted oop

Python
Object-Oriented Programming
…or: circumstantial evidence that I am still alive.
May 10, 2018
Thadryan

 

Find and replace in Python

Python
Data Processing
Like ctrl-f with Python.
Mar 12, 2018
Thadryan

 

ASH: Antigen Selection Heuristic

Antigens
Python
A prototype to select antigenic peptides.
Feb 20, 2018
Thadryan

 

Simple date-string conversion

Python
Data Processing
Answering a question an dates and strings.
Feb 6, 2018
Thadryan

Matrin Luther King Day

Sociopolitical
R
NLP
Marking the occasion with word clouds.
Jan 16, 2018
Thadryan

 

Trump v. Clinton: Twitter metadata classifier

Classifiying tweets as Hilary or Trump.
Jan 9, 2018
Thadryan

 

Python for Perl users

Python
Perl
All the kids are using Python now.
Dec 21, 2017
Thadryan

 

zip and dict

Perl
Python
The peanutbetter and jelly of paired data.
Dec 20, 2017
Thadryan
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